Publications

2026

  • Mallik S, Shiber A. “The twisted tale of cotranslational protein complex assembly.” Curr Opin Struct Biol. 2026;98:103281.
    doi:10.1016/j.sbi.2026.103281
  • Danial S, Ghanem R, Makhzumy M, Bitman-Lotan E, Soffers J, Henriksen J.C, Sarusi-Portuguez A, Rissland O.S, Mohan R.D, Shiber A, Orian A. “A Ubiquitin network safeguards cell identity by continuously degrading a stem-cell related translational machinery”. bioRxiv 2026.03.06.709266;
    https://doi.org/10.64898/2026.03.06.709266
  • Shhade Q., Estrada M., Hannah R., Makhzumy M., Bar-Yosef H., Kramer G., Bukau B., Shiber A. “Distinct cis-acting elements combinatorically mediate co-localization of mRNAs encoding for co-translational interactors in cytoplasmic clusters in S. cerevisiae” Journal of Molecular Biology.
    https://doi.org/10.1016/j.jmb.2025.169546 (Also
    https://doi.org/10.1101/2025.02.19.639054).

2025

  • Venezian J. & Shiber A. “Co-Translational Complex Assembly” Review. Section “Folding, Non-folding, and Misfolding of Proteins and Nucleic Acids”, Comprehensive Biophysics, 2nd Edition, Section Editor Uversky V., Editors-in-Chief Lamb D.C & Fried M.G.
    https://doi.org/10.1016/B978-0-323-99507-8.00023-8
  • Mallik, S., Venezian, J., Lobov, A., Heidenreich, M., Garcia-Seisdedos, H., Yeates, T.O., Shiber, A., Levy, E.D. “Structural determinants of co-translational protein complex assembly”. Cell.
    https://doi.org/10.1016/j.cell.2024.11.013

2024

  • Coux, O., Farràs, R., … Shiber, A., … (2024). “ProteoCure: a European network to fine-tune the proteome”. Biochimie.
    https://doi.org/10.1016/j.biochi.2024.06.004
  • Mallik, S., Venezian, J., Lobov, A., Heidenreich, M., Garcia-Seisdedos, H., Yeates, T.O., Shiber, A., Levy, E.D. “Structural determinants of co-translational protein complex assembly”. bioRxiv.
    https://doi.org/10.1101/2024.01.20.576408
  • Shiber, A. “Early insights into co-translational assembly of protein complexes”. Nat Rev Mol Cell Biol.
    https://doi.org/10.1038/s41580-024-00728-w
  • Venezian, J., Bar-Yosef, H., Ben-Arie Zilberman, H., Cohen, N., Kleifeld, O., Fernandez-Recio, J., Glaser, F., & Shiber, A. “Diverging co-translational protein complex assembly pathways are governed by interface energy distribution”. Nat Commun, 15, 2638.
    https://doi.org/10.1038/s41467-024-46881-w

2023

  • Shiber, A., Arava, Y.S. “Yeast: Translation Regulation and Localized Translation”. Microorganisms, 13;11(3):739.

2021

  • Venezian J., Zilberman H., Shiber A., “Global Identification of Co-Translational Interaction Networks by Selective Ribosome Profiling”. (2021) J Vis Exp.
    Link to Article
  • Bar-Yosef H., Venezian J., Klann K. & Shiber A. “Purification of Ribosome-Nascent-Chain complex for Ribosome Profiling and Selective Ribosome Profiling” (2021) Methods in Molecular Biology, protocol book series.
    Springer Protocols
  • Sharma, A.K., Venezian J., Shiber A., Kramer G., Bukau B. & O’Brien E.P. “Combinations of slow translating codon clusters increase mRNA half-life several fold in S. cerevisiae“. (2021) PNAS.
    https://www.biorxiv.org/content/10.1101/490995v1

2019

  • Kramer G., Shiber A., Bukau B. “Mechanisms of co-translational maturation of newly synthesized proteins”. (2019) Annual Review of Biochemistry. 88:337-364.
    Annual Reviews Link

2018

  • Shiber A., Döring K., Friedrich U., Klann K., Merker D., Zedan M., Tippmann F., Kramer G., Bukau B. “Co-translational assembly of protein complexes in eukaryotes revealed by ribosome profiling”. (2018) Nature. 561(7722):268-272.
    https://www.nature.com/articles/s41586-018-0462-y

2014

  • Shiber A., Breuer W., Brandeis M. Ravid T. “Characterization of intracellular protein aggregates by flow cytometry”. (2014) Prion. 1;8(3): 276-284.
    Taylor & Francis Link
  • Shiber A., Ravid T. “Chaperoning Proteins for Destruction: Diverse Roles of Heat Shock Proteins in Targeting Misfolded Proteins to the Proteasome”. (2014) Biomolecules. 17;4(3):704-24.
    https://www.mdpi.com/2218-273X/4/3/704

2013

  • Shiber A, Breuer W, Brandeis M, Ravid T. “Ubiquitin conjugation triggers misfolded protein sequestration into quality-control foci when Hsp70 chaperone levels are limiting”. (2013) Molecular Biology of the Cell. 24(13):2076-87.
    Mbc Link

2011

  • Furth N, Gertman O, Shiber A, Alfassy OS, Cohen I, Rosenberg M, Kleinberger-Doron N, Friedler A, Ravid T. “Exposure of Bipartite Hydrophobic Signal Triggers Nuclear Quality Control of Ndc10 at the Endoplasmic Reticulum/Nuclear Envelope”. (2011) Molecular Biology of the Cell. 22(24):4726-39.
    Mbc Link

2008

  • Shiber A, Gaur RK, Rimon-Knopf R, Zelcer A, Trebitsh T. “The origin and mode of function of the Female locus in cucumber”. (2008) Cucurbitaceae. 2008:263–270
    ResearchGate Link